Phylogenetic Independence test For Serial Independence made easy, help you conduct the Test For Serial Independence (TFSI) on continuously valued characters and the Runs Test on discretely valued characters.
MEGA is an integrated tool for conducting automatic and manual sequence alignment, inferring phylogenetic trees, mining web-based databases, estimating rates of molecular evolution, inferring ancestral sequences, and testing evolutionary hypotheses.
Create phylogenetic trees with this tool. NJplot is a tree drawing software able to draw any phylogenetic tree expressed in the Newick phylogenetic tree format (e.g., the format used by the PHYLIP package).
Unrooted is a tree drawing software able to draw any binary tree expressed in the standard phylogenetic tree format (e.g., the format used by the PHYLIP package). Trees are drawn in an unrooted way, that is, using a circular shape,
The T-REX web server allows users to carry out several popular algorithms for inferring and validating phylogenetic trees and networks, and performing other related bioinformatics tasks.
TreeView is a program to view phylogenetic trees in your computer. A phylogenetic tree is a graphical representation of a hypothesis about the evolution of a species, with branches that separate, hybridize, or become terminated by extinction.
DARwin is a software package developed for diversity and phylogenetic analysis on the basis of evolutionary dissimilarities.
TreeView X is an open source program to display phylogenetic trees on Linux, Unix, Mac OS X, and Windows platforms. It can read and display NEXUS and Newick format tree files (such as those output by PAUP*, ClustalX, TREE-PUZZLE, and other programs).
Phylogenetic model averaging. jMODELTEST ijModelTest is a software to carry out statistical selection of best-fit models of nucleotide substitution. It implements five different model selection strategies:
Geneious Basic is a software that speeds up and simplifies research in molecular biology and biochemistry. Geneious is a useful,
Phylogenetic networks computation made easy. SplitsTree4 is the leading software for computing unrooted phylogenetic networks from molecular sequence data. Given an alignment of sequences, a distance matrix or a set of trees,